Detailed information of SNP:
|
SNP ID:
sf1216397525(Gbrowse)
Chromosome: chr12 Position: 16397525 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 54.21% | 45.79% |
| All Indica | 796 | 87.69% | 12.31% |
| All Japonica | 472 | 7.42% | 92.58% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 331 | 0.91% | 99.09% |
| Tropical Japonica | 79 | 29.11% | 70.89% |
| Japonica Intermediate | 62 | 14.52% | 85.48% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216397525 | A->G | LOC_Os12g27830(LOC_Os12g27830.1) | INTRON |