Detailed information of SNP:
|
SNP ID:
sf1216398769(Gbrowse)
Chromosome: chr12 Position: 16398769 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 97.43% | 2.57% |
| All Indica | 790 | 95.57% | 4.43% |
| All Japonica | 491 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 98.86% | 1.14% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216398769 | G->A | INTERGENIC | None |