Detailed information of SNP:
|
SNP ID:
sf1216406693(Gbrowse)
Chromosome: chr12 Position: 16406693 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 85.25% | 14.75% |
| All Indica | 797 | 92.10% | 7.90% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216406693 | C->G | INTERGENIC | None |