Detailed information of SNP:
|
SNP ID:
sf1216410295(Gbrowse)
Chromosome: chr12 Position: 16410295 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 69.48% | 30.52% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 496 | 22.18% | 77.82% |
| Aus | 28 | 82.14% | 17.86% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 6 | 66.67% | 33.33% |
| Intermediate | 35 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216410295 | T->C | LOC_Os12g27850(LOC_Os12g27850.1) | INTRON |