Detailed information of SNP:
|
SNP ID:
sf1216410868(Gbrowse)
Chromosome: chr12 Position: 16410868 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 92.81% | 7.19% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216410868 | A->G | LOC_Os12g27850(LOC_Os12g27850.1) | Non-Synonymous SNP |