Detailed information of SNP:
|
SNP ID:
sf1216411702(Gbrowse)
Chromosome: chr12 Position: 16411702 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 57.50% | 42.50% |
| All Indica | 796 | 67.59% | 32.41% |
| All Japonica | 496 | 35.89% | 64.11% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 38.97% | 61.03% |
| Indica Intermediate | 208 | 68.27% | 31.73% |
| Temperate Japonica | 335 | 29.85% | 70.15% |
| Tropical Japonica | 93 | 43.01% | 56.99% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216411702 | A->G | INTERGENIC | None |