Detailed information of SNP:
|
SNP ID:
sf1216413862(Gbrowse)
Chromosome: chr12 Position: 16413862 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 61.98% | 38.02% |
| All Indica | 795 | 42.64% | 57.36% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 372 | 24.73% | 75.27% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216413862 | G->A | INTERGENIC | None |