Detailed information of SNP:
|
SNP ID:
sf1216415766(Gbrowse)
Chromosome: chr12 Position: 16415766 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 61.33% | 38.67% |
| All Indica | 798 | 41.48% | 58.52% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 375 | 22.67% | 77.33% |
| Indica II | 212 | 72.64% | 27.36% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216415766 | C->T | INTERGENIC | None |