Detailed information of SNP:
|
SNP ID:
sf1216419920(Gbrowse)
Chromosome: chr12 Position: 16419920 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 67.92% | 32.08% |
| All Indica | 736 | 49.73% | 50.27% |
| All Japonica | 491 | 95.52% | 4.48% |
| Aus | 56 | 64.29% | 35.71% |
| Indica I | 347 | 51.01% | 48.99% |
| Indica II | 200 | 53.00% | 47.00% |
| Indica Intermediate | 189 | 43.92% | 56.08% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 90 | 84.44% | 15.56% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216419920 | G->A | INTERGENIC | None |