Detailed information of SNP:
|
SNP ID:
sf1216420098(Gbrowse)
Chromosome: chr12 Position: 16420098 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 88.76% | 11.24% |
| All Indica | 727 | 82.26% | 17.74% |
| All Japonica | 491 | 98.98% | 1.02% |
| Aus | 63 | 76.19% | 23.81% |
| Indica I | 340 | 80.88% | 19.12% |
| Indica II | 197 | 86.80% | 13.20% |
| Indica Intermediate | 190 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 95.51% | 4.49% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216420098 | C->A | INTERGENIC | None |