Detailed information of SNP:
|
SNP ID:
sf1216421824(Gbrowse)
Chromosome: chr12 Position: 16421824 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 88.35% | 11.65% |
| All Indica | 796 | 96.98% | 3.02% |
| All Japonica | 497 | 74.85% | 25.15% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 82.99% | 17.01% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216421824 | A->G | LOC_Os12g27860(LOC_Os12g27860.1) | INTRON |