Detailed information of SNP:
|
SNP ID:
sf1216432217(Gbrowse)
Chromosome: chr12 Position: 16432217 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1308 | 91.82% | 8.18% |
| All Indica | 696 | 86.78% | 13.22% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 314 | 81.85% | 18.15% |
| Indica II | 197 | 92.39% | 7.61% |
| Indica Intermediate | 185 | 89.19% | 10.81% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216432217 | A->G | INTERGENIC | None |