Detailed information of SNP:
|
SNP ID:
sf1216435686(Gbrowse)
Chromosome: chr12 Position: 16435686 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 89.50% | 10.50% |
| All Indica | 750 | 85.47% | 14.53% |
| All Japonica | 489 | 96.93% | 3.07% |
| Aus | 62 | 87.10% | 12.90% |
| Indica I | 357 | 89.08% | 10.92% |
| Indica II | 197 | 82.23% | 17.77% |
| Indica Intermediate | 196 | 82.14% | 17.86% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 89 | 95.51% | 4.49% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216435686 | G->A | LOC_Os12g27880(LOC_Os12g27880.1) | Synonymous |