Detailed information of SNP:
|
SNP ID:
sf1216438402(Gbrowse)
Chromosome: chr12 Position: 16438402 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 90.49% | 9.51% |
| All Indica | 793 | 96.47% | 3.53% |
| All Japonica | 483 | 79.71% | 20.29% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 95.66% | 4.34% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 323 | 72.76% | 27.24% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216438402 | A->G | LOC_Os12g27880(LOC_Os12g27880.1) | Non-Synonymous SNP |