Detailed information of SNP:
|
SNP ID:
sf1216451783(Gbrowse)
Chromosome: chr12 Position: 16451783 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 76.65% | 23.35% |
| All Indica | 796 | 76.51% | 23.49% |
| All Japonica | 496 | 74.40% | 25.60% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 83.69% | 16.31% |
| Indica II | 212 | 62.74% | 37.26% |
| Indica Intermediate | 210 | 77.62% | 22.38% |
| Temperate Japonica | 334 | 83.23% | 16.77% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216451783 | C->T | LOC_Os12g27910(LOC_Os12g27910.1) | Synonymous |