Detailed information of SNP:
|
SNP ID:
sf1216453193(Gbrowse)
Chromosome: chr12 Position: 16453193 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 94.86% | 5.14% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 481 | 86.28% | 13.72% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 85.71% | 14.29% |
| Tropical Japonica | 86 | 93.02% | 6.98% |
| Japonica Intermediate | 66 | 80.30% | 19.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216453193 | C->T | LOC_Os12g27910(LOC_Os12g27910.1) | Synonymous |