Detailed information of SNP:
|
SNP ID:
sf1216453466(Gbrowse)
Chromosome: chr12 Position: 16453466 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 87.46% | 12.54% |
| All Indica | 778 | 91.90% | 8.10% |
| All Japonica | 481 | 81.70% | 18.30% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 367 | 94.01% | 5.99% |
| Indica II | 208 | 89.42% | 10.58% |
| Indica Intermediate | 203 | 90.64% | 9.36% |
| Temperate Japonica | 323 | 89.78% | 10.22% |
| Tropical Japonica | 92 | 53.26% | 46.74% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216453466 | A->G | LOC_Os12g27910(LOC_Os12g27910.1) | Synonymous |