Detailed information of SNP:
|
SNP ID:
sf1216460493(Gbrowse)
Chromosome: chr12 Position: 16460493 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 63.11% | 36.89% |
| All Indica | 796 | 40.45% | 59.55% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 21.07% | 78.93% |
| Indica II | 212 | 72.64% | 27.36% |
| Indica Intermediate | 209 | 42.58% | 57.42% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216460493 | A->G | LOC_Os12g27930(LOC_Os12g27930.1) | INTRON |