Detailed information of SNP:
|
SNP ID:
sf1216461092(Gbrowse)
Chromosome: chr12 Position: 16461092 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.31% | 46.69% |
| All Indica | 799 | 76.35% | 23.65% |
| All Japonica | 497 | 22.54% | 77.46% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 53.05% | 46.95% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 19.40% | 80.60% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216461092 | C->T | LOC_Os12g27930(LOC_Os12g27930.1) | UTR_3_PRIME |