Detailed information of SNP:
|
SNP ID:
sf1216461232(Gbrowse)
Chromosome: chr12 Position: 16461232 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 50.57% | 49.43% |
| All Indica | 796 | 25.38% | 74.62% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 63 | 31.75% | 68.25% |
| Indica I | 375 | 5.60% | 94.40% |
| Indica II | 211 | 50.24% | 49.76% |
| Indica Intermediate | 210 | 35.71% | 64.29% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216461232 | G->C | LOC_Os12g27930(LOC_Os12g27930.1) | UTR_3_PRIME |