Detailed information of SNP:
|
SNP ID:
sf1216461435(Gbrowse)
Chromosome: chr12 Position: 16461435 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 57.86% | 42.14% |
| All Indica | 795 | 32.08% | 67.92% |
| All Japonica | 496 | 93.55% | 6.45% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 375 | 5.60% | 94.40% |
| Indica II | 211 | 72.04% | 27.96% |
| Indica Intermediate | 209 | 39.23% | 60.77% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216461435 | C->T | INTERGENIC | None |