Detailed information of SNP:
|
SNP ID:
sf1216463000(Gbrowse)
Chromosome: chr12 Position: 16463000 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 81.51% | 18.49% |
| All Indica | 797 | 84.57% | 15.43% |
| All Japonica | 497 | 75.05% | 24.95% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 64.62% | 35.38% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 83.58% | 16.42% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216463000 | C->A | INTERGENIC | None |