Detailed information of SNP:
|
SNP ID:
sf1216466373(Gbrowse)
Chromosome: chr12 Position: 16466373 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 77.40% | 22.60% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 495 | 40.00% | 60.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 334 | 23.65% | 76.35% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216466373 | A->G | INTERGENIC | None |