Detailed information of SNP:
|
SNP ID:
sf1216467224(Gbrowse)
Chromosome: chr12 Position: 16467224 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 59.38% | 40.62% |
| All Indica | 799 | 33.92% | 66.08% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 6.40% | 93.60% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 42.65% | 57.35% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216467224 | A->C | LOC_Os12g27940(LOC_Os12g27940.1) | UTR_3_PRIME |