Detailed information of SNP:
|
SNP ID:
sf1216467308(Gbrowse)
Chromosome: chr12 Position: 16467308 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 90.25% | 9.75% |
| All Indica | 797 | 86.45% | 13.55% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216467308 | C->T | INTERGENIC | None |