Detailed information of SNP:
|
SNP ID:
sf1216467441(Gbrowse)
Chromosome: chr12 Position: 16467441 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.20% | 39.80% |
| All Indica | 798 | 35.21% | 64.79% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 374 | 8.02% | 91.98% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216467441 | C->A | INTERGENIC | None |