Detailed information of SNP:
|
SNP ID:
sf1216467753(Gbrowse)
Chromosome: chr12 Position: 16467753 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 71.57% | 28.43% |
| All Indica | 793 | 75.66% | 24.34% |
| All Japonica | 495 | 72.12% | 27.88% |
| Aus | 65 | 33.85% | 66.15% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 210 | 39.52% | 60.48% |
| Indica Intermediate | 208 | 72.60% | 27.40% |
| Temperate Japonica | 335 | 80.90% | 19.10% |
| Tropical Japonica | 93 | 40.86% | 59.14% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216467753 | G->A | INTERGENIC | None |