Detailed information of SNP:
|
SNP ID:
sf1216468336(Gbrowse)
Chromosome: chr12 Position: 16468336 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 77.63% | 22.37% |
| All Indica | 798 | 75.81% | 24.19% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 66 | 40.91% | 59.09% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 39.62% | 60.38% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216468336 | T->G | INTERGENIC | None |