Detailed information of SNP:
|
SNP ID:
sf1216468454(Gbrowse)
Chromosome: chr12 Position: 16468454 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 60.26% | 39.74% |
| All Indica | 792 | 35.23% | 64.77% |
| All Japonica | 496 | 93.55% | 6.45% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 374 | 10.16% | 89.84% |
| Indica II | 211 | 72.99% | 27.01% |
| Indica Intermediate | 207 | 42.03% | 57.97% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216468454 | G->T | INTERGENIC | None |