Detailed information of SNP:
|
SNP ID:
sf1216480034(Gbrowse)
Chromosome: chr12 Position: 16480034 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 66.08% | 33.92% |
| All Indica | 799 | 65.33% | 34.67% |
| All Japonica | 490 | 68.98% | 31.02% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 64.80% | 35.20% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 328 | 76.83% | 23.17% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216480034 | G->T | LOC_Os12g27950(LOC_Os12g27950.1) | Non-Synonymous SNP |