Detailed information of SNP:
|
SNP ID:
sf1216480326(Gbrowse)
Chromosome: chr12 Position: 16480326 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 85.82% | 14.18% |
| All Indica | 798 | 76.44% | 23.56% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 71.47% | 28.53% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216480326 | C->T | INTERGENIC | None |