Detailed information of SNP:
|
SNP ID:
sf1216484274(Gbrowse)
Chromosome: chr12 Position: 16484274 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 64.41% | 35.59% |
| All Indica | 799 | 66.46% | 33.54% |
| All Japonica | 497 | 63.58% | 36.42% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 65.07% | 34.93% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 69.85% | 30.15% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216484274 | A->T | INTERGENIC | None |