Detailed information of SNP:
|
SNP ID:
sf1216489592(Gbrowse)
Chromosome: chr12 Position: 16489592 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 72.47% | 27.53% |
| All Indica | 798 | 67.29% | 32.71% |
| All Japonica | 494 | 83.81% | 16.19% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 375 | 66.67% | 33.33% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 210 | 62.38% | 37.62% |
| Temperate Japonica | 333 | 88.59% | 11.41% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216489592 | A->G | LOC_Os12g27970(LOC_Os12g27970.1) | INTRON |