Detailed information of SNP:
|
SNP ID:
sf1216509623(Gbrowse)
Chromosome: chr12 Position: 16509623 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 63.22% | 36.78% |
| All Indica | 794 | 64.61% | 35.39% |
| All Japonica | 496 | 63.10% | 36.90% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 372 | 62.37% | 37.63% |
| Indica II | 212 | 72.64% | 27.36% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 69.25% | 30.75% |
| Tropical Japonica | 93 | 55.91% | 44.09% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216509623 | T->C | INTERGENIC | None |