Detailed information of SNP:
|
SNP ID:
sf1216512154(Gbrowse)
Chromosome: chr12 Position: 16512154 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1371 | 71.12% | 28.88% |
| All Indica | 758 | 80.08% | 19.92% |
| All Japonica | 495 | 62.63% | 37.37% |
| Aus | 64 | 39.06% | 60.94% |
| Indica I | 349 | 81.09% | 18.91% |
| Indica II | 205 | 88.78% | 11.22% |
| Indica Intermediate | 204 | 69.61% | 30.39% |
| Temperate Japonica | 335 | 69.25% | 30.75% |
| Tropical Japonica | 92 | 52.17% | 47.83% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216512154 | T->C | LOC_Os12g28010(LOC_Os12g28010.1) | Non-Synonymous SNP |