Detailed information of SNP:
|
SNP ID:
sf1216512481(Gbrowse)
Chromosome: chr12 Position: 16512481 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 72.56% | 27.44% |
| All Indica | 791 | 65.36% | 34.64% |
| All Japonica | 495 | 88.08% | 11.92% |
| Aus | 65 | 47.69% | 52.31% |
| Indica I | 373 | 63.81% | 36.19% |
| Indica II | 211 | 72.04% | 27.96% |
| Indica Intermediate | 207 | 61.35% | 38.65% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216512481 | A->G | LOC_Os12g28010(LOC_Os12g28010.1) | INTRON |