Detailed information of SNP:
SNP ID:
sf1216521611(Gbrowse)
Chromosome: chr12 Position: 16521611 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1391 | 70.17% | 29.83% |
All Indica | 777 | 59.33% | 40.67% |
All Japonica | 494 | 91.90% | 8.10% |
Aus | 64 | 43.75% | 56.25% |
Indica I | 367 | 59.67% | 40.33% |
Indica II | 202 | 63.37% | 36.63% |
Indica Intermediate | 208 | 54.81% | 45.19% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 92 | 70.65% | 29.35% |
Japonica Intermediate | 67 | 83.58% | 16.42% |
Group VI/Aromatic | 14 | 28.57% | 71.43% |
Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1216521611 | G->A | INTERGENIC | None |