Detailed information of SNP:
|
SNP ID:
sf1216521611(Gbrowse)
Chromosome: chr12 Position: 16521611 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 70.17% | 29.83% |
| All Indica | 777 | 59.33% | 40.67% |
| All Japonica | 494 | 91.90% | 8.10% |
| Aus | 64 | 43.75% | 56.25% |
| Indica I | 367 | 59.67% | 40.33% |
| Indica II | 202 | 63.37% | 36.63% |
| Indica Intermediate | 208 | 54.81% | 45.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 70.65% | 29.35% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216521611 | G->A | INTERGENIC | None |