Detailed information of SNP:
|
SNP ID:
sf1216525085(Gbrowse)
Chromosome: chr12 Position: 16525085 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 75.95% | 24.05% |
| All Indica | 796 | 95.73% | 4.27% |
| All Japonica | 496 | 40.32% | 59.68% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 24.18% | 75.82% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216525085 | A->G | LOC_Os12g28020(LOC_Os12g28020.1) | Synonymous |