Detailed information of SNP:
|
SNP ID:
sf1216527859(Gbrowse)
Chromosome: chr12 Position: 16527859 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 62.52% | 37.48% |
| All Indica | 768 | 46.09% | 53.91% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 362 | 48.62% | 51.38% |
| Indica II | 204 | 44.61% | 55.39% |
| Indica Intermediate | 202 | 43.07% | 56.93% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216527859 | A->G | INTERGENIC | None |