Detailed information of SNP:
|
SNP ID:
sf1216527897(Gbrowse)
Chromosome: chr12 Position: 16527897 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 74.59% | 25.41% |
| All Indica | 797 | 65.87% | 34.13% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 373 | 63.54% | 36.46% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216527897 | A->G | INTERGENIC | None |