Detailed information of SNP:
|
SNP ID:
sf1216530128(Gbrowse)
Chromosome: chr12 Position: 16530128 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 75.16% | 24.84% |
| All Indica | 797 | 66.50% | 33.50% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 65.24% | 34.76% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 210 | 61.90% | 38.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216530128 | C->T | INTERGENIC | None |