Detailed information of SNP:
|
SNP ID:
sf1216532554(Gbrowse)
Chromosome: chr12 Position: 16532554 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 74.81% | 25.19% |
| All Indica | 797 | 66.12% | 33.88% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 373 | 64.88% | 35.12% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216532554 | G->A | INTERGENIC | None |