Detailed information of SNP:
|
SNP ID:
sf1216538674(Gbrowse)
Chromosome: chr12 Position: 16538674 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 93.30% | 6.70% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 93.41% | 6.59% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216538674 | C->T | INTERGENIC | None |