Detailed information of SNP:
|
SNP ID:
sf1216539438(Gbrowse)
Chromosome: chr12 Position: 16539438 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 58.45% | 41.55% |
| All Indica | 775 | 85.03% | 14.97% |
| All Japonica | 487 | 10.27% | 89.73% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 373 | 81.77% | 18.23% |
| Indica II | 192 | 94.79% | 5.21% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 85 | 51.76% | 48.24% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216539438 | A->G | INTERGENIC | None |