Detailed information of SNP:
|
SNP ID:
sf1216539812(Gbrowse)
Chromosome: chr12 Position: 16539812 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1343 | 52.12% | 47.88% |
| All Indica | 731 | 37.21% | 62.79% |
| All Japonica | 494 | 82.59% | 17.41% |
| Aus | 64 | 7.81% | 92.19% |
| Indica I | 365 | 48.77% | 51.23% |
| Indica II | 172 | 15.12% | 84.88% |
| Indica Intermediate | 194 | 35.05% | 64.95% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 22.83% | 77.17% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216539812 | T->C | INTERGENIC | None |