Detailed information of SNP:
|
SNP ID:
sf1216540685(Gbrowse)
Chromosome: chr12 Position: 16540685 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 64.71% | 35.29% |
| All Indica | 794 | 46.10% | 53.90% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 36.63% | 63.37% |
| Indica II | 210 | 50.48% | 49.52% |
| Indica Intermediate | 210 | 58.57% | 41.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216540685 | A->T | INTERGENIC | None |