Detailed information of SNP:
|
SNP ID:
sf1216542878(Gbrowse)
Chromosome: chr12 Position: 16542878 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.45% | 23.55% |
| All Indica | 798 | 67.92% | 32.08% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 213 | 46.48% | 53.52% |
| Indica Intermediate | 210 | 70.95% | 29.05% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216542878 | C->T | INTERGENIC | None |