Detailed information of SNP:
|
SNP ID:
sf1216542995(Gbrowse)
Chromosome: chr12 Position: 16542995 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 79.52% | 20.48% |
| All Indica | 797 | 68.13% | 31.87% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 78.07% | 21.93% |
| Indica II | 212 | 47.17% | 52.83% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216542995 | A->G | INTERGENIC | None |