Detailed information of SNP:
|
SNP ID:
sf1216547561(Gbrowse)
Chromosome: chr12 Position: 16547561 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 70.35% | 29.65% |
| All Indica | 789 | 54.63% | 45.37% |
| All Japonica | 451 | 92.90% | 7.10% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 64.80% | 35.20% |
| Indica II | 205 | 41.95% | 58.05% |
| Indica Intermediate | 209 | 48.80% | 51.20% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 50 | 60.00% | 40.00% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216547561 | G->A | INTERGENIC | None |