Detailed information of SNP:
|
SNP ID:
sf1216547668(Gbrowse)
Chromosome: chr12 Position: 16547668 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.83% | 33.17% |
| All Indica | 798 | 50.50% | 49.50% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 36.90% | 63.10% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216547668 | G->A | INTERGENIC | None |